I got all my parts so went and had a go with a spare pc I had knocking around, i3 4160. Gotta say with the die mate 2 it really was a piece of cake! What a great well designed tool. Anyway, first tried using arctic mx2 between die and ihs and just using the clamp to hold it in place, amazed to see a clear 10 degree drop on full load! I then moved on to liquid ultra and used the rtv silicon to reattach the ihs but this time it was about 2 deg warmer than the mx2. I've redone it a second time using less liquid ultra but the temps are the same. A good improvement but it seems to cool better with mx2 or it could be that I'm not reattaching the ihs
The reason you saw the increase when you used the rtv silicone is because it increased the gap between the core and the IHS.