Yes it is a pwm pump. Tried altering the speed via software but it doesn't sound to be having any effect. I'll try manually adjusting it next.
I assume its set to 2 but it could also be 5... Not sure. Hard to reach with a screwdriver in its current position.
http://imgur.com/a/6idkO
Look like 5. Turn it anti clockwise. if it only moves so far it was on 2. If you can move the bit which points to 5 all the way round to 2 then it wasnt.