I'm trying to do exactly this at the moment but was struggling to find a decent looking small case. I found this
http://www.fractal-design.com/?view=product&prod=43 but its quite big due to the stupid horizontal drive stacking and apparently it doesn't cool the drives that well, which is a shame because it looks pretty awesome!

The case you're using doesn't look too bad, any chance of a few more pics of the outside?
You mention that the 120mm was the noisiest and you used an LNA adapter to quieten it, what is an LNA adapter exactly?
Does the IDE flash module just sit on top of the IDE port? Is there a 2.5" drive bay in addition to the 4x 3.5" bays if I wanted to use that instead of the flash module?
Thanks