Soldato
- Joined
- 31 May 2006
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Any one else see this: it's not in the log file only the active terminal.
Something for the non-finstall club
Edit: Sorry about the lack of formating
M E G A - F L O P S A C C O U N T I N G
Parallel run - timing based on wallclock.
RF=Reaction-Field FE=Free Energy SCFE=Soft-Core/Free Energy
T=Tabulated W3=SPC/TIP3p W4=TIP4p (single or pairs)
NF=No Forces
Computing: M-Number M-Flops % of Flops
-----------------------------------------------------------------------
VdW(T)...........................94636.068304.......5110347.688416.......16.5
RF Coul.............................37756.850926.......1245976.080558.......4.0
RF Coul [W3]........................177.841327......17428.450046.......0.1
RF Coul + VdW(T)..................42888.828544.......2787773.855360.......9.0
RF Coul + VdW(T) [W3]..........19947.140273.......2593128.235490........4
RF Coul + VdW(T) [W3-W3]....53957.041775.......17266253.368000.......55.6
Outer nonbonded loop............16550.280462.......165502.804620.......0.5
1,4 nonbonded interactions.......74.132118.......6671.890620.......0.0
NS-Pairs.........................34922.076707.......733363.610847.......2.4
Reset In Box.....................270.882873.......2437.945857.......0.0
Shift-X..............................5409.264546.......32455.587276.......0.1
CG-CoM.............................123.235200.......3573.820800.......0.0
Sum Forces........................8124.397119.......8124.397119.......0.0
Bonds...............................922.031343.......39647.347749.......0.1
Angles.............................1085.241006.......176894.283978.......0.6
Propers............................374.125689.......85674.782781.......0.3
Impropers........................70.002000.......14560.416000.......0.0
RB-Dihedrals.....................982.443069.......242663.438043.......0.8
Virial................................2711.912481.......48814.424658.......0.2
Update...............................2708.132373.......83952.103563.......0.3
Stop-CM...........................2708.055000.......27080.550000.......0.1
P-Coupling.........................2708.132373.......16248.794238.......0.1
Calc-Ekin...........................2708.209746.......73121.663142.......0.2
Constraint-V........................2708.132373.......16248.794238.......0.1
Constraint-Vir.....................1765.310436.......42367.450464.......0.1
Settle.................................588.436812.......190065.090276.......0.6
-----------------------------------------------------------------------
Total 31030376.874139 100.0
-----------------------------------------------------------------------
NODE (s) Real (s) (%)
Time: 5422.000 5422.000 100.0
1h30:22
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 45.991 5.723 15.935 1.506
[21:13:33] Will end MPI now
[21:14:33]
you get this at the start too
[21:17:34] Project: 2608 (Run 1, Clone 243, Gen 2)
[21:17:34]
[21:17:34] Entering M.D.
[21:17:35] one 243, Gen 2)
[21:17:35]
[21:17:35] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=lemonman
NNODES=4, MYRANK=1, HOSTNAME=lemonman
NNODES=4, MYRANK=2, HOSTNAME=lemonman
NNODES=4, MYRANK=3, HOSTNAME=lemonman
NODEID=2 argc=15
NODEID=1 argc=15
NODEID=0 argc=15
NODEID=3 argc=15
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2004, The GROMACS development team,
check out http://www.gromacs.org for more information.
This inclusion of Gromacs code in the Folding@Home Core is under
a special license (see http://folding.stanford.edu/gromacs.html)
specially granted to Stanford by the copyright holders. If you
are interested in using Gromacs, visit www.gromacs.org where
you can download a free version of Gromacs under
the terms of the GNU General Public License (GPL) as published
by the Free Software Foundation; either version 2 of the License,
or (at your option) any later version.
[21:17:41] Rejecting checkpoint
[21:17:45] Protein: Protein
starting mdrun 'Protein'
500000 steps, 15000.0 ps.
[21:17:46] Writing local files
[21:17:49] Extra SSE boost OK.
[21:17:50] Writing local files
[21:17:50] Completed 0 out of 500000 steps (0 percent)
[21:19:05] Posted data.
[21:19:05] Initial: 0000; - Uploaded at ~39 kB/s
[21:19:06] - Averaged speed for that direction ~40 kB/s
[21:19:06] + Results successfully sent
[21:19:06] Thank you for your contribution to Folding@Home.
[21:19:06] + Number of Units Completed: 5
Something for the non-finstall club

Edit: Sorry about the lack of formating

M E G A - F L O P S A C C O U N T I N G
Parallel run - timing based on wallclock.
RF=Reaction-Field FE=Free Energy SCFE=Soft-Core/Free Energy
T=Tabulated W3=SPC/TIP3p W4=TIP4p (single or pairs)
NF=No Forces
Computing: M-Number M-Flops % of Flops
-----------------------------------------------------------------------
VdW(T)...........................94636.068304.......5110347.688416.......16.5
RF Coul.............................37756.850926.......1245976.080558.......4.0
RF Coul [W3]........................177.841327......17428.450046.......0.1
RF Coul + VdW(T)..................42888.828544.......2787773.855360.......9.0
RF Coul + VdW(T) [W3]..........19947.140273.......2593128.235490........4
RF Coul + VdW(T) [W3-W3]....53957.041775.......17266253.368000.......55.6
Outer nonbonded loop............16550.280462.......165502.804620.......0.5
1,4 nonbonded interactions.......74.132118.......6671.890620.......0.0
NS-Pairs.........................34922.076707.......733363.610847.......2.4
Reset In Box.....................270.882873.......2437.945857.......0.0
Shift-X..............................5409.264546.......32455.587276.......0.1
CG-CoM.............................123.235200.......3573.820800.......0.0
Sum Forces........................8124.397119.......8124.397119.......0.0
Bonds...............................922.031343.......39647.347749.......0.1
Angles.............................1085.241006.......176894.283978.......0.6
Propers............................374.125689.......85674.782781.......0.3
Impropers........................70.002000.......14560.416000.......0.0
RB-Dihedrals.....................982.443069.......242663.438043.......0.8
Virial................................2711.912481.......48814.424658.......0.2
Update...............................2708.132373.......83952.103563.......0.3
Stop-CM...........................2708.055000.......27080.550000.......0.1
P-Coupling.........................2708.132373.......16248.794238.......0.1
Calc-Ekin...........................2708.209746.......73121.663142.......0.2
Constraint-V........................2708.132373.......16248.794238.......0.1
Constraint-Vir.....................1765.310436.......42367.450464.......0.1
Settle.................................588.436812.......190065.090276.......0.6
-----------------------------------------------------------------------
Total 31030376.874139 100.0
-----------------------------------------------------------------------
NODE (s) Real (s) (%)
Time: 5422.000 5422.000 100.0
1h30:22
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 45.991 5.723 15.935 1.506
[21:13:33] Will end MPI now
[21:14:33]
you get this at the start too

[21:17:34] Project: 2608 (Run 1, Clone 243, Gen 2)
[21:17:34]
[21:17:34] Entering M.D.
[21:17:35] one 243, Gen 2)
[21:17:35]
[21:17:35] Entering M.D.
NNODES=4, MYRANK=0, HOSTNAME=lemonman
NNODES=4, MYRANK=1, HOSTNAME=lemonman
NNODES=4, MYRANK=2, HOSTNAME=lemonman
NNODES=4, MYRANK=3, HOSTNAME=lemonman
NODEID=2 argc=15
NODEID=1 argc=15
NODEID=0 argc=15
NODEID=3 argc=15
Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2004, The GROMACS development team,
check out http://www.gromacs.org for more information.
This inclusion of Gromacs code in the Folding@Home Core is under
a special license (see http://folding.stanford.edu/gromacs.html)
specially granted to Stanford by the copyright holders. If you
are interested in using Gromacs, visit www.gromacs.org where
you can download a free version of Gromacs under
the terms of the GNU General Public License (GPL) as published
by the Free Software Foundation; either version 2 of the License,
or (at your option) any later version.
[21:17:41] Rejecting checkpoint
[21:17:45] Protein: Protein
starting mdrun 'Protein'
500000 steps, 15000.0 ps.
[21:17:46] Writing local files
[21:17:49] Extra SSE boost OK.
[21:17:50] Writing local files
[21:17:50] Completed 0 out of 500000 steps (0 percent)
[21:19:05] Posted data.
[21:19:05] Initial: 0000; - Uploaded at ~39 kB/s
[21:19:06] - Averaged speed for that direction ~40 kB/s
[21:19:06] + Results successfully sent
[21:19:06] Thank you for your contribution to Folding@Home.
[21:19:06] + Number of Units Completed: 5
Last edited: