If your crunching them - look in the logs following the initialisation of the new WU it should say something like
[05:40:54] Protein: p964_fk-fstr-nprot-r
[05:40:54]
[05:40:54] Writing local files
[05:40:54] Extra SSE2 boost OK.
[05:40:55] Writing local files
[05:40:55] Completed 0 out of 100000 steps (0)
If the SSE2 line is not their it's not running (I think)
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