What you have to consider is...
The intake fan is bringing COLD air to decrease temperatures. An outtake fan takes out HOT air, but doesn't cool anything down. Thus my personal opinion is that an intake fan is more useful.
If all of your fans were outtake fans your temperatures wouldn't decrease that much. If they were all intake fans, they would all be sucking cold air in which would force the temperature inside the case to lower. I'm not suggesting outtake fans aren't needed; of course they are - if you keep pulling cold air in, with no escape for the warm air, the air temperature will gradually stabilise and the intake fans won't do much at all.
If you have the more powerful fan pulling air in you are pulling more cold air inside the case. The outtake fan will pull the remaining hot air out. Even if there isn't a balance in the intake/outtake, the general physics of the air being pulled in will eventually be pushed out.
On another note, hot air rises. So, if you have a case that, intakes through the front and outtakes through the back, put the more powerful, intake fan, at the front. This is because the intake fan is lower - as the cold air is pulled in, warms up, it rises and then exhausts through the slightly higher, outtake fan.