I've also noticed that issue on Vista, on my PC. It's far too agressive in turning off HDDs, which is all well and good for a notebook, but it's annoying for a PC when you're going through files and it keeps stopping and starting.
This sort of happened to me when I installed Vista x64 recently. My 5 externals were all over the place and I just couldn't figure out why, so I returned to x32 and things were back to normal. Maybe SP1 may fix my odd issue.
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