They have changed the pin configuration.
iPods used to support 2 methods of charging. Firewire power and USB power. Apple stated 3 years ago that they were dropping support for Firewire and Firewire power and the iPhone 3G is the first device that has done so.
Most 3rd party manufacturers didn't bother to change their charging circuits and as such, we have the problem you are facing. My Lexus iPod system has the same issue.
Rumour has it that Apple will be bringing out a small dongle which switches the power connections around for older devices.