Depending on the pitch of the noise, it might be possible to isolate the main source of noise simply by running your PC with the side off, putting your head next to it and moving your head. The old low-tech way sometimes works
For better control, I'd buy a fan controller and put all case fans on that. OcUK stock some fan controllers, from cheap ones that just control 3 fans to more expensive ones that control 4 fans and give you a real-time display of the fan speeds, etc.
OcUK fan controller page
I'd also consider replacing the original fans in the case. Find out what they are first - are they the standard Antec Tri-Cools? Those aren't bad, but you can buy fans that are both better for cooling and quieter. I have Akasa Ultra Quiet ("Amber") fans in mine, which are good at low speed, but there are better. Yate Loon fans seem to be a surprisingly good buy at the moment - very cheap (I've seen 120mm ones for £4!), very efficient and very quiet. OcUK don't stock them, though. I'd buy them if they did.
I suspect the PSU or graphics card for the main noise source, though.
The pre-fitted coolers on graphics cards can be quite horribly noisy. If that's the case, you could try to enable fan speed control on it, if it has it and it works. That way, it would only be loud when you're gaming, which probably won't be a problem. The other option is to fit a 3rd-party cooler, which would almost certainly void your warrantly.
Is your PSU the GameXStream model from OCZ? That comes out in reviews as being very quiet.