None of these systems except the mATX towers have any headroom over the CPU. They all require the CPU cooler to be less than somewhere in the region of 125mm tall. Silverstone make really good low profile CPU coolers. Arctic cooling make the Silencer which is an upgrade for the stock intel cooler and works a little better, the Zalman flower fans are all less than 120mm tall and the Thermaltake Blue, Gold and Ruby Orbs all work very well.
Just be careful of the position of the CPU on the motherboard as sometimes a 120mm fan cooler will fit, and sometimes it won't. As a general rule of thumb, anything with a 92mm cooler definitely fits and anything 120mm you can expect to be bending fins either to get it in, or to get the case side panel on.
My personal preference is for the Silverstone Nitrogon NT06 as long as you have a really good 120mm fan in the PSU and the PSU is fitted right over the CPU (like the Sugo).
In terms of build, the Lian Li is the best by far. The Sugo and TJ-08 are great front plates with pretty ordinary cases behind them and the Antec used to have fairly big cooling issues when it was called the Aria. The only way for air to leave the case is through the PSU as the 120mm PSU fan is the exhaust.
The Lian Li is also the least compromised on drive bays (2 full size and a floppy) whereas the Sugo you tend to end up with using laptop drives (as shown below).
One thing that picture doesn't show is the difference in depth between the Aria and the Sugo.
Sorry that I don't have a covered shot of the Sugo on the same plinth, but you can very clearly see the Sugo is much deeper.
http://www.walteranderson.com/Images/silverstone/side.jpg
http://www.walteranderson.com/Images/aria/aria2.JPG
Frontal sizes are shown in the picture below. The Akasa Acrylic mATX case is the same dimensions as the TJ-08.
http://www.walteranderson.com/Images/akasa/PICT1123.JPG