I don't know if height would be a major issue, but the length of the GPU (I know its the shortened one, but still) and the power of your whole system is going to be very tight.
er i do believe that the mini-itx case would probably need to take half height graphics cards at best.
had a gander: yup, low profile: http://www.in-win.us/products_pccase_series.php?cat_id=1&series_id=47
without the graphics card, there is no problems with that power supply. With the graphics card, probably, but you can get a higher graded shuttle-esque sized one, form factor TFX.
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