Personally should always do a reinstall (fresh) when you change the motherboard. At the end of the day you dont want old useless drivers/code written over Windows clogging it up and slowing down for something that should be faster then old hardware.
Id spend a day getting it right, latest drivers for motherboard, SP1 Vista, latest graphics drivers (updating directx10 as well), etc. Then your set to go. It would be tradgic to leave it then find out after installing everything that you will need to start again. At least you will know any errors from a fresh install are not down to older software being on hard drive and that type of conflict.