I have both the SLK1650 and the Ninja at my disposal, however, I am unwilling to remove the Ninja from its current system and attempt to fit it in the SLK1650
Looking at them, though, I think you should have no problem as long as there's no side duct in the way. The Ninja is about an inch away from the side panel in my CM Mystique, and the SLK1650 is about the same width.
Oh, and if you're planning to use the 120mm fan with the Ninja, that could pose a problem if your RAM is anything larger than standard (e.g. Corsair's XMS Pro or XPERT). Otherwise the fan should easily fit in too.
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