There are some adaptors around to connect a small fan header to a Molex.
The yellow cable on the Molex is 12volts, the red is 5 volts and the black(s) are 0v (or return).
If you connect the fan motor red wire to the yellow 12v lead and the fan motor black to the (red) 5v cable on a spare Molex, it will run on 7 volts (12-5), so it will be quieter, but you will have to make your own adaptor or 'cut and shut' the cable. Of course it will run slower and may not cool so effectively.