Good story...

Deus Ex (original), Max Payne 1, Mass Effect, Thief 2, Deus Ex HR to some degrees. Very few recent games where I've been really pulled into the story.
 
Deus Ex
System Shock 2
Bioshock
Mass Effect & ME2
Knights Of The Old Republic + KOTOR2 *with restoration mod*
No One Lives Forever & NOLF2
Chrono Trigger
Fallout series
Planescape Torment
Neverwinter Nights series
Baldurs Gate series
Half Life
 
Deus Ex
System Shock 2
Bioshock
Mass Effect & ME2
Knights Of The Old Republic + KOTOR2 *with restoration mod*
No One Lives Forever & NOLF2
Chrono Trigger
Fallout series
Planescape Torment
Neverwinter Nights series
Baldurs Gate series
Half Life

The bolded are superb for story, Palnsecape Torment is the best story in a game bar none,. The script is above all others seen to this day.
 
holy crap balls! how did i forget system shock 2!

"L-l-l-l-look at you, h-h-h-hacker: a pathetic creature of meat and bone, panting and sweating as you run through my corridors. How can you challenge a perfect, immortal machine?"

I remember first playing it and not knowing how to adjust the gamma/brightness so the game was almost pitch black xD super terrifying!!!

always liked stories when a computer has become or almost self aware and starts making it's own decisions, bit like irobot and wargames xD
 
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