Ok, worry is over now, after enough turning the engine everything eventually lined up correctly. However, my main concern now is that the headgasket is knackered, the reason for doing this work was because the car overheated (needed new water pump). The oil is a kind of coffee colour so i'm pretty sure it's gone, will drive it a bit this week to make sure, but it certainly looks like it'll be going on ebay for spares or repair soon.
Oh well.
Hold on....how many times did you turn the crank to check that the marks still line up?
Lots, however, i'm pretty sure the timing is correct as i've just driven it to tesco and back and it twas fine.
he's on about the lines on the belt.