Its less about cost, but scalability, something that for a few years, AMD has done incredibly well on, Intel might have QPI and on die mem controllers and trip channel memory NOW, but you don't just build a supercomputer over night, planning time and design all takes a while. In another 2-3 years some of the more complex and huge new supercomputers will be based on i7's/i9's, and in another 3 years they'll be bulldozers.
Though theres one thing, AMD might still dominate, depends exactly what platform those opterons are on, but AMD will be offering more compatibility for dropping in a quad/6 core than Intel do, meaning several of them could be upgraded to be far more powerful with little more than new chips.
Most of them are still lots and lots of dual core chips, because as said they are general based on not completely up to date equipment. Its almost surprising the China one uses 4870's as they are still fairly new, infact brand new in terms of supercomputer stuff.
The newest top 5-10 supercomputers every year will always do a disproportionate amount of number crunching compared to the next 10 and the rest after that as there aren't that many supercomputers.
Very interesting to see though, I don't know what would be more surprising, how much they cost to put together, or how much cash they burn through in power. Considering they are often cooled by a ridiculous amount of AC units aswell.