They do it because the modules need more Vdimm than the mobos give at default. When DDR2 first came out there were issues with performance RAM not booting on some boards as they weren't giving enough Vdimm, so you had to put a cheapo stick in, manually set Vdimm then shutdown and swap in the performance RAM.
My 4GB OCZ kit defaults to PC5300 speeds but is rated at PC6400.