Managed to get booted into Windows again, ran Prime 95 and a few tools. Looked at various measurements, spotted 12V was sitting at 10.xV. Started to measure with voltmeter, moved some cables around, noticed that the mobo power cut in and out.
Long story short, turns out that the mobo PSU cable (modular PSU) wasnt in 100% and was causing a problem. Have since pushed everything in correctly and not had any issues. HWWiz is now reporting 12V on the rail too.
I suspect this could have been from when I removed the mobo first time round when the CPU died.
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