Are you putting the priming sugar into the bottles, or are you mixing it into the batch of beer then bottling it? If it's the latter, I'd almost rack it into your secondary bucket for a few days, let more of the yeast and hop bits drop out, then rack that back into your first bucket to batch prime it for bottling. Only problem is the more times it's "messed" with, increases the chances of an infection slightly.
I think if I were bottling, I'd maybe make a syrup and measure that into the bottles maybe. Just so the beer isn't being transferred lots of times, and so you're not stirring up all the hops and yeat when you batch prime.
I'm sure other people will also have suggestions though that are better.