maybe were wrong in thinking raid had ahci still and actually ahci has raid in it?
Only reason I can guess as to why its working now.
Your getting much nicer speeds now, might be worth me moving my f1s off the controller card and putting my ssd/optical drive on it, would have to test the ssd speeds on the controller though, dont want that to be getting hampered, but i imagine if not using the raid features it should just pss through and not get slowed down, but might add latency which would suck.
Glad you got it working now, and that it increased speeds so was in fact worth it and not just a waste of time