I have a similar issue with my HIS 5850 - When I start the pc I have a blank screen for about 30 seconds and I can hear something inside powering up and down until finally my boot up screen appears and the pc runs as normal. I have a 580W OCZ PSU with one dedicated PCI-E power slot and have used the supplied adaptor for the other gfx card socket (with no other components daisy chained to it). I felt like bumping this thread to see if Andy has made any progress on the issue...
Exactly the same problem here with my Sapphire, there is no boot screen to begin with and it only shows something on the 2nd screen when detecting my RAID array.
It still all works and I can still hit DEL for the bios even though I have a blank screen so not that bothered but clearly something is wrong.