The pics are not of the same board just the same component on an Intel D945 board, I couldn't find a good pic of the actual D945GCZ.
I am inclined to think it is the crystal too but why have it in the odd shape plastic case and why are so many of the ones i've seen opening up.
Do you think Intel would bother getting back to me? it's not a board that's going to be under warranty.
I just remembered I think I have a faulty board in the office, I could cut the component off and investigate.