generally the fastest part of the disk is the start, so conventional wisdoms states. So if you've loaded mw2 at the end of the disk it could be the reason.
You might get better performance by not using raid, and dedicateing the start of disk 2 to your games, the start of disk 1 to you os, and then the rest for docs etc.
To illustrate this:
Whole disc:

Short stroke (equivalent of a partition to keep stuff on the faster part of the disc)

As you can see the minimum transfer rate is around 50% slower at one edge of the platter and overall seek times are double. So if his installation is mostly on the faster part of the partition and yours is spread over the whole disc with quite a bit in the last 1/3rd its going to make a massive difference to load times.