First things first, thanks for all the support and comments received. I've finally decided on the loop layout and the fan orientation.
I've actually been busy on it most of today, and hadn't had chance to see the last few responses above. As much as I think the bottom Rad option is the best thermally I 'm going for option 2 as it is a tidier loop, and i'd rahter have a tider loop and maybe leese a few degrees.
As I say I've even been doing some actual work on the case as opposed to just staring at it and trying to visualise things.
Rather than reams of text I'm going to try to let the photos do the talking, with just a few comments from me here and there.
Top fans mounted, they will be cooling the rad on push. If it's a disaster it's no biggy to swap them around or swap them out for a different set.
First bit of the loop goes in (the clips will get tightened later)
Rest of the loop installed and clips tightened.
Front and base fans installed on intake
Using Bitfenix Spectre 120mm fans Black with Orange LEDs on the bottom.
Braided them of course, couldn't put them in looking like this
Also going to be installing this rather nice NZXT string LED.
PSU is the rather nice Antec Truepower 750. it's a semi modular design having all the major cables attached and the ability to add more if desired. Just got to work out what to do with all those wires
Stuff them round the back for now
The perfect crime (not)
Next up I'll be filling the loop and leak testing.