"Our aim from the outset was to conduct a proper, thorough, search and do it in the proper manner," Ayre told the Liverpool Echo.
"From our point of view, we did all the right things. We approached the clubs we needed to approach, and conducted ourselves properly at all times.
"It is disappointing, then, that Dave Whelan felt the need to run the kind of sideshow he conducted via Sky Sports News and various other media outlets.
"To be honest, I always thought John Bishop was the biggest comedian in the north west but Dave Whelan seems to have taken that mantle over the last couple of weeks."