Indeed.
So, you have to take a look at the performance of the cars across the entire season.
When you take into account that in the first 3 races McLaren had the fastest car and in the last 3 races they were also the quickest car. That's 6 races out of 13 races so far. Williams were fastest in another race. Merc was quickest in another. And RBR were quickest in the rest.
By my reckoning McLaren, in terms of car speed, on average, are certainly in 1st place followed by RBR in 2nd, and then Ferrari.
Mclaren had the fastest car in qualifying early in the season but it was pointed out by most that it wasn't the car with the fastest race pace. In fact Hamilton and the team generally said that they tuned the car far too much for qualifying and suffered from lack of race pace.
In previous seasons we've had tires that can go as fast as the car can at points really, this season its about preserving tires more than maybe ever before. Race pace even at the end is so far off qualifying pace its a joke.
Looking at say Aussie 2007 you have fastest lap in the race that beat the fastest qualifying time set in Q2, in 2012 you have over a 4 second difference between fastest lap in the race and fastest qualifying time.
That difference seems bigger pretty much every year. Being fastest in qualifying hasn't meant much at all in comparison to race pace. The Red Bulls have qualified WELL down and been insanely competitive in race pace, the Ferrari the same, Mclaren have basically never done that, the Merc's, the Mclaren and sometimes the Lotus have been able to show better qualifying pace than race pace while the Ferrari and at times the Red Bull haven't been able to but are FAR stronger in comparison during the race.
This is because if your car is built to do race pace laps at for example 1:29's but can't break 1:26 in quali, but another car can do 1:25's with ease in quali but goes around in the race at 1:30+.... which car is faster, race pace and the Ferrari has probably had more races at the top of the pack than anyone also a aero package that seems to make them pretty hard to overtake and pretty good at overtaking themselves.
I would say the Ferrari has been more consistently in the top 1 or 2 cars than any other team. If they had been better in quali Alonso would already have won the title probably as the car has been so strong in race pace. I wouldn't call it the third best car at all, for me its 1st or 2nd, and they are all pretty close.
I'd say most races of the season fall into fastest to slowest , Mclaren, Ferrari, Red Bull.... or Red Bull, Ferrari, Mclaren.... once you add the Mclaren mistakes into their races they qualified or had one of the stronger cars and for me the Ferrari has been the car to be in all year.
Sure, meh in qualifying, but the best race car/pit team to have under you.