There is a known issue with both PowerDVD & Total Media Theatre where they cannot play MKV files without constant stuttering some people claim they do it deliberately to cripple MKV playback neither company has fixed this either in their latest builds its being going on for a few years now.Weird, never had any issues like that here on AMD or nVidia. For AVCHD stuff like Tears Of The Sun in 4K I had to disable DXVA for the AVC internal video decoder. I had weird seek issues with it in DXVA mode but with it off for that it is butter smooth.
My CPU is a 3770K @ 4.6 btw. CPU usage with DXVA off for AVC-HD is around 27% iirc, with it ON it dropped to something like 13%.
MPC though has flawless MKV playback even for 1:1 MKV's over 40GB apart from the frame skipping. Not sure how I troubleshoot that either !