However it's not unknown at all for the backups in some aircraft to be knocked out at the same time as the primaries. IIRC the lines often have to be near each other at certain points due to where they are going, and there are still "single point of failure" in the designs because you can't always remove them (if you want the backups to operate say the wheels you need to have both the primary and secondary going to the wheels).
From memory there have been several incidents where systems that were designed with multiple backups have failed due to things like a bit of turbine blade slicing through two or three independent lines where they had to meet to get to where they were in use.
I'm not sure if that aircraft had a manual backup for the landing gear, but from memory the manual system takes a lot of time to deploy and takes at least one member of the cockpit crew off flying*, whilst the gravity drop backup for the landing gear takes time to deploy and it can be better to not do it because it you get one or two sets of gear down but not say the left side you can be in a worse situation than if you'd not got any down as the aircraft will immediately start to go off to the side or might catch a wing on the ground and flip.
*Which was bad enough in the older aircraft where you might have had 3 or 4 people in the cockpit, modern ones only tend to have the two pilots (no engineer or navigator).