Used to use it a lot before I found smaa and I had zero problems with it performance wise.
I not sure how Fxaa can effect performance? It's a blur filter to help reduce edges. It's not rendered by the GPU like msaa is.
So how can it effect performance?
Edit
Smaa not msaa
Of course it is rendered by the GPU and FXAA is nVidia's creation. Not sure why it runs poorly but poor optimisation perhaps?