10yrs ago the FIA seemed to be making decisions to ensure MS/Ferrari didnt dominate. One of the most notable changes were in qualifying, which they felt MS was too dominant in. Unfortunately, the changes they made allowed MS to dominate qualifying, even more.
This bias changed I think from last year when the FIA did everything in their power to ensure McLaren didnt when any title. It seems that 2yrs (2005/6) without a Ferrari title was about as much as the FIA could take.
You should stop listening to the little voices telling you there is a conspiracy when there is none. Raikkonen got more points than Hamilton even though Hamiltons engineer (but not honest Ron if we believe what he says) knew exactly when Raikkonen was going to make his pit stops for god knows how many races at the start of the season. For everything that happened last season swap the words Mclaren and Ferrari around and you would not be saying anything about the FIA helping Mclaren.