Anyway there was a regular stream of pirate ships that I could kill so sat there doing that for a couple hours and captured 6 ships. The ships I was escorting eventually all died while they floundered about so I sent my new acquisitions off to argon prime. When they got to argon prime I did a broadcast ordering them to dock at the shipyard, but instead of doing this they all but 2 flew off on completely random trajectories away from the shipyard and just kept going. Then as I was reissuing orders to these headless chickens a group of 4 pirates flew in and massacred my ships and eventually me.
Gotta laugh really. Is there some software you need to make ships follow your commands better?
Yes, fly out of the sector, they seem to navigate better, but yes I had similar docking problem.